Recent publications (2004-2007)

UNIBO Recent publications (2004-2005)
• Capriotti E, Fariselli P, Rossi I, Casadio R - A Shannon entropy-based filter detects high-quality profile-profile alignments in searches for remote homologues - Proteins 54:351-360 (2004)
• Berezin C, Glaser F, Rosenberg J, Paz I, Pupko T, Fariselli P, Casadio R, Ben-Tal N - ConSeq: the identification of functionally and structurally important residues in protein sequences - Bioinformatics 20:1322-1324 (2004)
• Martelli PL, Fariselli P, Casadio R - Prediction of disulfide-bonded cysteines in proteomes with a hidden neural network - Proteomics 4:1665-1671 (2004)
• Aiello R, Messina A, Schiffler B, Benz R, Tasco G, Casadio R, De Pinto V - Functional characterization of a second porin isoform in drosophila melanogster: DmPorin2 forms voltage-independent cation selective pores - J Biol Chem 279:25364-25373 (2004)
• Durante D, Casadio R, Martelli PL, Tasco G, Portaccio M, De Luca P, Bencivenga U, Rossi S, Di Martino S, Grano V, Diano N, Mita DG - Isothermal and non-isothermal bioreactors in the detoxification of waste waters polluted by aromatic compounds by means of immobilised laccase from Rhus vernicifera - J Mol Catal B: Enzym 27:191-206 (2004)
• Grano V, Tasco G, Casadio R, Diano N, Portaccio M, Rossi S, Bencivenga U, Compiani M, De Maio A, Mita DG - Reduction of active elastase concentration by means of immobilized inhibitors: a novel therapeutic approach - Biotechnol Prog 20:968-974 (2004)
• Capriotti E, Fariselli P, Casadio R - A neural-network-based method for predicting protein stability changes upon single point mutations - Bioinformatics 20:I63-I68 (2004)
• Compiani M, Capriotti E, Casadio R - Dynamics of the minimally frustrated helices determine the hierarchical folding of small helical proteins - Phys Rev E 69:051905.1-051905.8 (2004)
• Aguzzi MS, Facchiano F, Ribatti D, Gaeta R, Casadio R, Rossi I, Capogrossi MC, Facchiano A - A novel RGDS-analog inhibits angiogenesis in vitro and in vivo - Biochem Biophys Res Commun 321:809-814 (2004)
• Gianni T, Martelli PL, Casadio R, Campadelli-Fiume G - An internal fusion peptide in herpes simplex virus glycoprotein H enables fusion required for infection of cells - J Virol 79:2931-2940 (2005)
• Calonghi N, Cappadone C, Pagnotta E, Boga C, Bertucci C, Fiori J, Tasco G, Casadio R, Masotti L - Histone deacetylase 1: a target of 9-hydroxystearic acid in the inhibition of cell growth in human colon cancer - J Lipid Res (2005, in press)
• Capriotti E, Fariselli P, Casadio R - I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure - Nucl Acids Res 33: W303-W305 (2005)
• Fariselli P, Finelli M, Rossi I, Amico M, Zauli A, Martelli PL, Casadio R - TRAMPLE: the transmembrane protein labelling environment - Nucl Acids Res 33: W198-W201 (2005)
• Capriotti E, Fariselli P, Calabrese R, Casadio R - Predictinf protein stability changes from sequences with support vector machines - Bioinformatics 2005 Sep 1;21 Suppl 2:ii54-8 (2005)
• Milanesi L, Petrillo M, Sepe L, Boccia A, D'Agostino N, Passamano M, Di Nardo S, Tasco G, Casadio R, Paolella G. - Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity. - BMC Bioinformatics. Dec 1;6 Suppl 4:S20. (2005)
• Fariselli P, Martelli PL, Casadio R. - A new decoding algorithm for hidden Markov models improves the prediction of the topology of all-beta membrane proteins. - BMC Bioinformatics. Dec 1;6 Suppl 4:S12. (2005)
• Morozzo Della Rocca B, Miniero DV, Tasco G, Dolce V, Falconi M, Ludovico A, Cappello AR, Sanchez P, Stipani I, Casadio R, Desideri A, Palmieri F. - Substrate-induced conformational changes of the mitochondrial oxoglutarate carrier: a spectroscopic and molecular modelling study. - Mol Membr Biol. Sep-Oct;22(5):443-52. (2005)
• D'Abusco AS, Casadio R, Tasco G, Giangiacomo L, Giartosio A, Calamia V, Di Marco S, Chiaraluce R, Consalvi V, Scandurra R, Politi L. - Oligomerization of Sulfolobus solfataricus signature amidase is promoted by acidic pH and high temperature. -Archaea. Dec;1(6):411-23. (2005)
• Becker L, Bannwarth M, Meisinger C, Hill K, Model K, Krimmer T, Casadio R, Truscott KN, Schulz GE, Pfanner N, Wagner R. - Preprotein translocase of the outer mitochondrial membrane: reconstituted Tom40 forms a characteristic TOM pore. - J Mol Biol. Nov 11;353(5):1011-20 (2005)
UNIBO Recent publications (2006-2007)
• Fermani S, Sparla F, Falini G, Martelli PL, Casadio R, Pupillo P, Ripamonti A,Trost P. - Molecular mechanism of thioredoxin regulation in photosynthetic A2B2-glyceraldehyde-3-phosphate dehydrogenase.
Proc Natl Acad Sci U S A. Jun 26;104(26):11109-14 (2007)
• Montanucci L, Martelli PL, Fariselli P, Casadio R. - Robust determinants of thermostability highlighted by a codon frequency index capable of discriminating thermophilic from mesophilic genomes.
J Proteome Res. Jul;6(7):2502-8. (2007)
• Bartoli L, Calabrese R, Fariselli P, Mita DG, Casadio R. - A computational approach for detecting peptidases and their specific inhibitors at the genome level.
BMC Bioinformatics. Mar 8;8 Suppl 1:S3. (2007)
• Tress ML, Martelli PL, Frankish A, Reeves GA, Wesselink JJ, Yeats C, Olason PL, Albrecht M, Hegyi H, Giorgetti A, Raimondo D, Lagarde J, Laskowski RA, Lopez G, Sadowski MI, Watson JD, Fariselli P, Rossi I, Nagy A, Kai W, Storling Z, Orsini M, Assenov Y, Blankenburg H, Huthmacher C, Ramirez F, Schlicker A, Denoeud F, Jones P, Kerrien S, Orchard S, Antonarakis SE, Reymond A, Birney E, Brunak S, Casadio R, Guigo R, Harrow J, Hermjakob H, Jones DT, Lengauer T, Orengo CA, Patthy L, Thornton JM, Tramontano A, Valencia A. -  The implications of alternative splicing in the ENCODE protein complement. - Proc Natl Acad Sci U S A. Mar 27;104(13):5495-500. (2007)
• Capriotti E, Casadio R. - K-Fold: a tool for the prediction of the protein folding kinetic order and rate. - Bioinformatics. Feb 1;23(3):385-6. (2007)
• Pierleoni A, Martelli PL, Fariselli P, Casadio R. - eSLDB: eukaryotic subcellular localization database. - Nucleic Acids Res. 2007 Jan;35(Database issue):D208-12.
• Fariselli P, Rossi I, Capriotti E, Casadio R. - The WWWH of remote homolog detection: the state of the art. - Brief Bioinform. Mar;8(2):78-87. (2007)
• Tassoni A, Franceschetti M, Tasco G, Casadio R, Bagni N. - Cloning, functional identification and structural modelling of Vitis vinifera S-adenosylmethionine decarboxylase. - J Plant Physiol. Sep;164(9):1208-19 (2007)
• Casadio R, Fariselli P, Martelli PL, Tasco G. - Thinking the impossible: how to solve the protein folding problem with and without homologous structures and more. - Methods Mol Biol. ;350:305-20. Review. (2007)
• Grandi F, Sandal M, Guarguaglini G, Capriotti E, Casadio R, Samori B. - Hierarchical mechanochemical switches in angiostatin. - Chembiochem. Nov;7(11):1774-82. (2006)
• Capriotti E, Calabrese R, Casadio R. - Predicting the insurgence of human genetic diseases associated to single point protein mutations with support vector machines and evolutionary information. - Bioinformatics. Nov 15;22(22):2729-34 (2006)
• Pierleoni A, Martelli PL, Fariselli P, Casadio R. - BaCelLo: a balanced subcellular localization predictor. - Bioinformatics. Jul 15;22(14):e408-16. (2006)
• Amico M, Finelli M, Rossi I, Zauli A, Elofsson A, Viklund H, von Heijne G, Jones D, Krogh A, Fariselli P, Luigi Martelli P, Casadio R. - PONGO: a web server for multiple predictions of all-alpha transmembrane proteins. - Nucleic Acids Res. Jul 1;34(Web Server issue):W169-72. (2006)
• Marani P, Wagner S, Baars L, Genevaux P, de Gier JW, Nilsson I, Casadio R, von Heijne G. - New Escherichia coli outer membrane proteins identified through prediction and experimental verification. - Protein Sci. Apr;15(4):884-9 (2006)
• Occhipinti E, Bec N, Gambirasio B, Baietta G, Martelli PL, Casadio R, Balny C, Lange R, Tortora P. - Pressure and temperature as tools for investigating the role of individual non-covalent interactions in enzymatic reactions Sulfolobus solfataricus carboxypeptidase as a model enzyme. - Biochim Biophys Acta. Mar;1764(3):563-72 (2006)

UNIROMA2 Recent publications (2004-2005)
• Via, A., Zanzoni, A., Helmer-Citterich, M (2005). Seq2Struct: a resource for establishing sequence-structure links. Bioinformatics, 21:551-552.
• Ausiello, G., Zanzoni, A., Peluso, D., Via, A., Helmer-Citterich, M. (2005). pdbFun Mass selection and fast comparison of annotated PDB residues. Nucl.Acids Res.,33, 133-137
• Ferrθ, F., Ausiello, G., Zanzoni, A., Helmer-Citterich, M - Functional annotation by identification of local surface similarities: a novel tool for structural genomics. BMC Bioinformatics, in press.
• Via, A, Helmer-Citterich, M. (2004). A structural study for the optimisation of functional motifs encoded in protein sequences BMC Bioinformatics, 5, 50.
• Ferrθ, F., Ausiello, G., Zanzoni, A., Helmer-Citterich, M. (2004). SURFACE: a database of protein surface regions for functional annotation. Nucl.Acids Res., 32, 240-244.
• The Internet for Cell and Molecular Biologists (2nd edition) 2004- ed. A. Cabibbo, M. Helmer-Citterich, Horizon Scientific Press, 451 pp, ISBN: 0-9545232-0-2.
• Puntervoll, P., Linding, R., Gemuend, C., Chabanis-Davidson, S., Mattingsdal, M., Cameron, S., Martin, D.M.A., Ausiello, G., Brannetti, B., Costantini, A., Ferrθ, F., Maselli, V., Via, A., Cesareni, G., Diella, F., Superti-Furga, G., Wyrwicz, Ramu, C., McGuigan, C., Gudavalli, R., Letunic, I., Bork, P., Rychlewski, Kuester, B., Helmer-Citterich, M., Hunter, W.N., Aasland, R. and Gibson, T. (2003) ELM server: a new resource for investigating short functional sites in modular eukaryotic proteins. Nucl. Acids Res., 31: 3625-3630
• Brannetti, B., Helmer-Citterich, M. (2003) iSPOT: a web tool to infer the interaction specificity of families of protein modules.Nucl. Acids Res., 31: 3709-3711.
• Cesareni, G., Helmer-Citterich, M. (2003) Searching the MINT database for protein interaction information. Protocols in Bioinformatics, John Wiley & Sons, Inc., 8.5.1-8.5.13.
• Ferrθ, F., Via, A., Ausiello, G., Brannetti, B., Zanzoni, A., Helmer-Citterich, M. (2003). Development of computational tools for the inference of protein interaction specificity rules and functional annotation using structural information. Comparative and Functional Genomics, 4, 416-419 .
UNIROMA2 Recent publications (2006-2007)
• Gherardini PF, Wass MN, Helmer-Citterich M, Sternberg MJ. - Convergent Evolution of Enzyme Active Sites Is not a Rare Phenomenon. - J Mol Biol. 2007 Jun 14; [Epub ahead of print]
• Cappuzzello C, Melchionna R, Mangoni A, Tripodi G, Ferrari P, Torielli L,Arcelli D, Helmer-Citterich M, Bianchi G, Capogrossi MC, Napolitano M.-  Role of rat alpha adducin in angiogenesis: Null effect of the F316Y polymorphism. - Cardiovasc Res. 2007 Aug 1;75(3):608-17
• Via A, Peluso D, Gherardini PF, de Rinaldis E, Colombo T, Ausiello G, Helmer-Citterich M. - 3dLOGO: a web server for the identification, analysis and use of conserved protein substructures. - Nucleic Acids Res. 2007 Jul 1;35(Web Server issue):W416-9.
• Ferraro E, Peluso D, Via A, Ausiello G, Helmer-Citterich M. - SH3-Hunter: discovery of SH3 domain interaction sites in proteins. - Nucleic Acids Res. 2007 Jul 1;35(Web Server issue):W451-4.
• Ausiello G, Peluso D, Via A, Helmer-Citterich M. - Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites. - BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S24.
• Zanzoni A, Ausiello G, Via A, Gherardini PF, Helmer-Citterich M. - Phospho3D: a database of three-dimensional structures of protein phosphorylation sites. - Nucleic Acids Res. 2007 Jan;35(Database issue):D229-31.
• Ferraro E, Via A, Ausiello G, Helmer-Citterich M. - A novel structure-based encoding for machine-learning applied to the inference of SH3 domain specificity. - Bioinformatics. 2006 Oct 1;22(19):2333-9.
• Nanni S, Priolo C, Grasselli A, D'Eletto M, Merola R, Moretti F, Gallucci M, De Carli P, Sentinelli S, Cianciulli AM, Mottolese M, Carlini P, Arcelli D, Helmer-Citterich M, Gaetano C, Loda M, Pontecorvi A, Bacchetti S, Sacchi A, Farsetti A. - Epithelial-restricted gene profile of primary cultures from human prostate tumors: a molecular approach to predict clinical behavior of prostate cancer. - Mol Cancer Res. 2006 Feb;4(2):79-92.


UNIROMA1 Recent publications (2004-2005)
• Brenner, S.,Tramontano, A. 2005. Sequences and topology: a decade of genomes,Curr. Opin. Struct. Biol., 15(3) 245-247.
• Moult, J., Fidelis, K., Hubbard, T., Rost, B., and Tramontano, A., 2005. Critical Assessment of Methods of Protein Structure Prediction (CASP) - Round VI, Proteins, in press.
• Soro, S., Tramontano, A.2005. Function Prediction at CASP6, Proteins, in press.
• Raimondo, D., Giorgetti, A., Miele, AE., Tramontano, A. 2005. Evaluating the usefulness of protein structure models for molecular replacement, Bioinformatics, in press.
• Tramontano, A. 2005. Protein Structure Prediction, Wiley Inc. in press
• Tramontano, A. 2005. The ten most wanted solutions in protein bioinformatics, Chapman&Hall/CRC Mathematical Biology and Medicine Series. 256 pp.
• Francisci, S., De Luca, C. Oliva, R., Morea, V., Tramontano, A. and Frontali, L., 2005. Aminoacylation and conformational properties of yeast mitochondrial mutants with respiratory deficiency, RNA, 11: 914-927.
• Cozzetto, D., Di Matteo, A. and Tramontano, A. 2005 Ten years of prediction ... and counting. FEBS Journal, 272, 881-882.
• Bonamore, A., Ilari, A., Giangiacomo, L., Bellelli, A., Morea, V. & Boffi, A. "A novel thermostable hemoglobin from the actinobacterium Thermobifida fusca" FEBS Journal, in press.
• Giangiacomo, L., Ilari, A., Boffi, A., Morea, V. & Chiancone, E. "The truncated oxygen-avid hemoglobin from Bacillus subtilis. X-ray structure and ligand binding properties." (2005), Journal of Biological Chemistry, 290:9192-9202.
• Cozzetto, D., Tramontano, A. 2004 The relationship between multiple sequence alignment and the quality of protein comparative models. Proteins, 58, 151-157.
• Tramontano, A. 2004 Folding and sequence analysis. Encyclopedia of condensed matter physics, Elsevier Press, in press.
• Tramontano, A. 2004 A brighter future for protein design. 2004. Angewandte Chemie, 116,2-3.
• Ghiotto, F., Fais, F., Valetto, A., Albesiano, E.,Hashimoto, S., Dono, M., Ikematsu, H., Allen, S.L., Rai, K.R.,Nardini, M., Tramontano, A., Ferrarini, M., Chiorazzi, N. 2004 - Remarkably similar antigen receptors in a subset of patients with IgG+ chronic lymphocytic leukemia. Journal Clin, Inv. 113:1008-1016
UNIROMA1 Recent publications (2006-2007)
• Guariento M, Raimondo D, Assfalg M, Zanzoni S, Pesente P, Ragona L, Tramontano A, Molinari H. - Identification and functional characterization of the bile acid transport proteins in non-mammalian ileum and mammalian liver. - Proteins. 2007 Aug 17  [Epub ahead of print]
• Carrabino D, D'Onorio De Meo P, Sanna N, Castrignano T, Orsini M, Floris M, Tramontano A. - The mepsMAP server. Mapping epitopes on protein surface: mining annotated proteins. - IEEE Trans Nanobioscience. 2007 Jun;6(2):155-61.
• Cozzetto D, Kryshtafovych A, Ceriani M, Tramontano A.  Assessment of predictions in the model quality assessment category. - Proteins. 2007 Aug 6; [Epub ahead of print]
• Zhao J, Tramontano A, Makker SP. - Albumin-stimulated TGFbeta-1 in renal tubular cells is associated with activation of MAP kinase. - Int Urol Nephrol. 2007 Aug 7; [Epub ahead of print]
• Oliva R, Tramontano A, Cavallo L. - Mg2+ binding and archaeosine modification stabilize the G15 C48 Levitt base pair in tRNAs.- RNA. 2007 Sep;13(9):1427-36. Epub 2007 Jul 24.
• Bertonati C, Tramontano A. - A model of the complex between the PfEMP1 malaria protein and the human ICAM-1 receptor. - Proteins. 2007 Jul 19; [Epub ahead of print]
• Tramontano A, Pearson WR. Sequences and topology: the completeness of biological space. - Curr Opin Struct Biol. 2007 Jun;17(3):334-336.
• Castrignano T, De Meo PD, Carrabino D, Orsini M, Floris M, Tramontano A. - The MEPS server for identifying protein conformational epitopes. - BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S6.
• Tress ML, Martelli PL, Frankish A, Reeves GA, Wesselink JJ, Yeats C, Olason PL, Albrecht M, Hegyi H, Giorgetti A, Raimondo D, Lagarde J, Laskowski RA, Lopez G, Sadowski MI, Watson JD, Fariselli P, Rossi I, Nagy A, Kai W, Storling Z,
Orsini M, Assenov Y, Blankenburg H, Huthmacher C, Ramirez F, Schlicker A, Denoeud F, Jones P, Kerrien S, Orchard S, Antonarakis SE, Reymond A, Birney E, Brunak S, Casadio R, Guigo R, Harrow J, Hermjakob H, Jones DT, Lengauer T, Orengo CA,
Patthy L, Thornton JM, Tramontano A, Valencia A. -  The implications of alternative splicing in the ENCODE protein complement. - Proc Natl Acad Sci U S A. 2007 Mar 27;104(13):5495-500.
• Ragno R, Simeoni S, Castellano S, Vicidomini C, Mai A, Caroli A, Tramontano A, Bonaccini C, Trojer P, Bauer I, Brosch G, Sbardella G. - Small molecule inhibitors of histone arginine methyltransferases: homology
modeling, molecular docking, binding mode analysis, and biological evaluations. J Med Chem. 2007 Mar 22;50(6):1241-53.
• Habibi J, Whaley-Connell A, Qazi MA, Hayden MR, Cooper SA, Tramontano A, Thyfault J, Stump C, Ferrario C, Muniyappa R, Sowers JR. - Rosuvastatin, a 3-hydroxy-3-methylglutaryl coenzyme a reductase inhibitor,
decreases cardiac oxidative stress and remodeling in Ren2 transgenic rats. - Endocrinology. 2007 May;148(5):2181-8
• Bianchettin G, Bonaccini C, Oliva R, Tramontano A, Cividini A, Casato M, Merlini G, Silini E, Mondelli MU. - Analysis of hepatitis C virus hypervariable region 1 sequence from cryoglobulinemic patients and associated controls.- J Virol. 2007 May;81(9):4564-71.
• Tramontano A. - Worth the effort. An account of the Seventh Meeting of the Worldwide Critical Assessment of Techniques for Protein Structure Prediction. - FEBS J. 2007 Apr;274(7):1651-4.
• Bavoso A, Ostuni A, De Vendel J, Pollaro F, Armentano F, Knight T, Makker S, Tramontano A. - Aldehyde modification of peptide immunogen enhances protein-reactive antibody response to toxic shock syndrome toxin-1. - J Pept Sci. 2006 Dec;12(12):843-9.
• Raimondo D, Giorgetti A, Giorgetti A, Bosi S, Tramontano A. - Automatic procedure for using models of proteins in molecular replacement. - Proteins. 2007 Feb 15;66(3):689-96.
• Makker SP, Tramontano A. - Differential capacity of anti-RAP and anti-megalin antibodies to produce progressive passive Heymann nephritis - implications for the pathogenesis of idiopathic human membranous glomerulonephritis.- J Pathol. 2006 Nov;210(3):282-7.
• Kinzel O, Fattori D, Muraglia E, Gallinari P, Nardi MC, Paolini C, Roscilli G, Toniatti C, Gonzalez Paz O, Laufer R, Lahm A, Tramontano A, Cortese R, De Francesco R, Ciliberto G, Koch U. -  A structure-guided approach to an orthogonal estrogen-receptor-based gene switch
activated by ligands suitable for in vivo studies. - J Med Chem. 2006 Sep 7;49(18):5404-7.
• De Marco G, Sordino D, Bruzzese E, Di Caro S, Mambretti D, Tramontano A, Colombo C, Simoni P, Guarino A. - Early treatment with ursodeoxycholic acid for cholestasis in children on parenteral nutrition because of primary intestinal failure.- Aliment Pharmacol Ther. 2006 Jul 15;24(2):387-94.
• Magnani M, Ortuso F, Soro S, Alcaro S, Tramontano A, Botta M. - The betaI/betaIII-tubulin isoforms and their complexes with antimitotic agents. Docking and molecular dynamics studies. - FEBS J. 2006 Jul;273(14):3301-10.
• Tramontano A, Knight T, Vizzuso D, Makker SP. - Nested N-terminal megalin fragments induce high-titer autoantibody and attenuated Heymann nephritis. - J Am Soc Nephrol. 2006 Jul;17(7):1979-85.
• Pellegrini-Calace M, Soro S, Tramontano A.- Revisiting the prediction of protein function at CASP6. - FEBS J. 2006 Jul;273(13):2977-83.
• Hur C, Chan AT, Tramontano AC, Gazelle GS. - Coxibs versus combination NSAID and PPI therapy for chronic pain: an exploration of the risks, benefits, and costs. - Ann Pharmacother. 2006 Jun;40(6):1052-63.
• Tramontano A. - The role of molecular modelling in biomedical research. - FEBS Lett. 2006 May 22;580(12):2928-34. Epub 2006 Apr 21. Review.
• Tress ML, Cozzetto D, Tramontano A, Valencia A. - An analysis of the Sargasso Sea resource and the consequences for database composition.- BMC Bioinformatics. 2006 Apr 19;7:213.
• Gianazza E, Vergani L, Wait R, Brizio C, Brambilla D, Begum S, Giancaspero TA,Conserva F, Eberini I, Bufano D, Angelini C, Pegoraro E, Tramontano A, Barile M. - Coordinated and reversible reduction of enzymes involved in terminal oxidative metabolism in skeletal muscle mitochondria from a riboflavin-responsive, multiple acyl-CoA dehydrogenase deficiency patient. - Electrophoresis. 2006 Mar;27(5-6):1182-98.
• Oliva R, Cavallo L, Tramontano A. -  Accurate energies of hydrogen bonded nucleic acid base pairs and triplets in tRNA tertiary interactions. - Nucleic Acids Res. 2006 Feb 6;34(3):865-79.
• Pellegrini-Calace M, Tramontano A. - Identification of a novel putative mitogen-activated kinase cascade on human chromosome 21 by computational approaches. - Bioinformatics. 2006 Apr 1;22(7):775-8. Epub 2006 Jan 20.
• Castrignano T, De Meo PD, Cozzetto D, Talamo IG, Tramontano A. - The PMDB Protein Model Database. - Nucleic Acids Res. 2006 Jan 1;34(Database issue):D306-9.
• Armentano F, Knight T, Makker S, Tramontano A. - Induction of covalent binding antibodies. - Immunol Lett. 2006 Feb 28;103(1):51-7.