Computational and Systems Biology
Workshop of the SIB Group “Computational and Systems Biology” With the collaboration of the Interdepartmental Center “Luigi Galvani”
Programme 10:10-10:20 Opening: Pier Luigi Martelli, Coordinator of the SIB Group “Computational and Systems Biology” Session 1: Protein structure and function 10:20-11:00 Lecture in Memory of Anna Tramontano: Gert Vriend, Radbout University, Nijmegen (NE) Sequence determines structure determines function. Well, forget it 11:00-11:15 Stefano Pascarella, University La Sapienza, Rome In-silico studies on a new family of bacterial transcriptional regulators 11:15-11:30 Veronica Morea, National Research Council, Rome Sequence-structure-function relationships in antibodies: Rational approach to antibody humanization 11:30-11:45 Damiano Piovesan, University of Padua Databases of intrinsically disordered proteins 11:45-12:00 Coffee break 12:00-12:15 Castrense Savojardo, University of Bologna Machine learning approaches to predict signal and targeting peptides in proteins 12:15-12:30 Alessandro Paiardini, University La Sapienza, Rome PyMod 2.0: improvements in protein sequence-structure analysis and homology modeling within PyMOL Session 2: Interactions 12:30-12:45 Andrea Mozzarelli, University of Parma The roles of water in the protein matrix 12:45-13:00 Anna Marabotti, University of Salerno A covalent docking approach to simulate the interactions of novel cephalosporin derivatives with their target 13:00-13:15 Fabio Polticelli, University Roma Tre, Rome Proteins’ ligand binding sites detection and function recognition using LIBRA-WA 13:15-14:30 Lunch Session 3: Systems 14:30-14:45 Allegra Via, National Research Council, Rome Integrating protein-protein interaction and expression data for the identification of cellular targets in drug delivery 14:45-15:00 Daniele Dell'Orco, University of Verona Intramolecular communication pathways in a calcium sensor protein unveil allosteric regulation mechanisms 15:00-15:15 Giovanni Minervini, University of Padua pVHL-driven cancerogenesis: an unsolved puzzle 15:15-15:30 Emanuele Domenico Giordano, University of Bologna Phenotypic variability in synthetic biology applications: Dealing with noise in microbial gene expression 15:30-15:45 Paola Coccetti, University of Milano-Bicocca Proteomics and integrative omic approaches for understanding the control of energy homeostasis 15:45-16:00 Enrico Giampieri, University of Bologna A small noise to kick into action 16:00-16:20- Coffee break 16:20-17:20 Round Table discussion on ELIXIR European Infrastructure Coordinators: Rita Casadio, Silvio Tosatto 17:20-17:30 Closing
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