Abstracts Selected For Oral Presentation

 

TFBSs prediction by integration of genomic, evolutionary, and gene expression data
    #2, Ambesi-Impiombato A, Bansal M, Rispoli R, Liò P, Di Bernardo D

Genome-wide prediction of PCR products based on termodynamic parameters
    #17, Boccia A, Silvestre A, Paolella G

Construction of compositionally biased amino acid substitution matrices to improve annotation of Plasmodium falciparum proteins
    #19, Brick K, Pizzi E

The MEPS server for identifying protein conformational epitopes
    #33, Castrignanò T, D'Onorio De Meo P, Carrabino D, Orsini M, Floris M, Tramontano A

A systems biology approach to the functional screening of genomes
    #35, Chiarugi D, Degano P, Marangoni R

Microarray cross-platforms differential expression validation
    #38, Cordero F, Saviozzi S, Di Renzo MF, Olivero M, Cirenei N, Calogero RA

A computational approach for detecting peptidases and their specific inhibitors at the genome level
    #48, Fariselli P, Bartoli L, Calabrese R, Mita DG, Casadio R

A novel structure-based encoding for machine-learning applied to the prediction of SH3 domain specificity
    #50, Ferraro E, Via A, Ausiello G, Helmer-Citterich M

Intragenic antisense transcription correlates with long UTRs
    #54, Finocchiaro G, Parise P, Di Ninni V, Francois S, Carro MS, Muller H

HServ and SNPly: a software infrastructure and a web agent for linking information on genetic variation
    #58, Gallimbeni R, Falconi M, Desideri A

Protein contact prediction with correlated mutation analysis using mixed physiochemical constraints
    #60, Horner D, Pesole G

Comparative Genomics of OXPHOS gene families
    #64, Lanave C, De Grassi A, Saccone C

The Wnt Pathway as in silico disease model for neuro-oncology
    #66, Malusa F, Gonzalez Couto E, Rossi M. Bakker A, Kremer A, Terstappen GC

Developement of a data mining system for human cell cycle data analysis
    #75, Milanesi L, Alfieri R, Merelli I

Alignment of Homologous Protein Structures in the Presence of Domain Motions
    #80, Mosca R, Schneider RT

A new procedure to detect similarities among distant homologous proteins based on the comparison of domain flexibilities
    #85, Pandini A, Mauri G, Bonati L

IMAGE: a new tool for the discovery of Transcription Factors binding sites
    #88, Paparcone R, Casilli R, Melchionna S, Marongiu A, Palazzari P, Rosato V

Assembling the Yeast Interactome
    #91 Persico M, Kiemer L, Cesareni G

Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data
    #96, Rambaldi D, Felice B, Praz V, Bucher P, Guffanti A

Precedence temporal networks for the representation of temporal relationships in gene expression data
    #100, Sacchi L, Larizza C, Magni P, Bellazzi R

Quantifying the relevance of different mediators in the human immune cell network
    #105, Tieri P, Valensin S, Latora V, Castellani GC, Marchiori M, Remondini D, Franceschi C

GAIA: Generation of alternative alignments by an inverse approach
    #106, Tosatto SCE, Albiero A

Structural adaptation to low temperatures: analysis of the subunit interface of oligomeric psychrophilic enzymes
    #110, Tronelli D, Gianese G, Pascarella S

A Global Gene Evolution Analysis on Vibrionaceae Family Using Phylogenetic Profile
    #114, Vitulo N, Vezzi A, Campanaro S, Romualdi C, Lauro F, Valle G