These options control formatting of alignments in results pages. The default is HTML, but other formats (including plain text) are available. PSSM and PssmWithParameters are representations of Position Specific Scoring Matrices and are only available for PSI-BLAST. The Advanced view option allows the database descriptions to be sorted by various indices in a table. more...
Choose how to view alignments. The default "pairwise" view shows how each subject sequence aligns individually to the query sequence. The "query-anchored" view shows how all subject sequences align to the query sequence. For each view type, you can choose to show "identities" (matching residues) as letters or dots. more...
Show only sequences from the given organism.
Show only those sequences that match the given Entrez query. more...
Show only sequences with expect values in the given range. more...
Your BLAST job specified more than one input sequence. This box lets you choose which input sequence to show BLAST results for.
An overview of the database sequences aligned to the query sequence is shown. The score of each alignment is indicated by one of five different colors, which divides the range of scores into five groups. Multiple alignments on the same database sequence are connected by a striped line. Mousing over a hit sequence causes the definition and score to be shown in the window at the top, clicking on a hit sequence takes the user to the associated alignments. New: This graphic is an overview of database sequences aligned to the query sequence. Alignments are color-coded by score, within one of five score ranges. Multiple alignments on the same database sequence are connected by a dashed line. Mousing over an alignment shows the alignment definition and score in the box at the top. Clicking an alignment displays the alignment detail.
Sequences with pattern at position and E-value BETTER than threshold Score E Sequences producing significant alignments: (Bits) Value ref|NP_498911.1| P GranuLe abnormality family member (pgl-2) ... 1085 0.0 pir||S44733 b0523.4 protein - Caenorhabditis elegans 751 0.0 pir||H88535 protein B0523.4 [imported] - Caenorhabditis elegans 653 0.0 pir||S44735 b0523.3 protein - Caenorhabditis elegans 321 2e-85 ref|XP_002639219.1| Hypothetical protein CBG03769 [Caenorhabd... 290 3e-76 ref|NP_001041065.1| P GranuLe abnormality family member (pgl-... 266 3e-69 ref|NP_001041066.1| P GranuLe abnormality family member (pgl-... 266 4e-69 ref|NP_504278.1| P GranuLe abnormality family member (pgl-3) ... 249 4e-64 ref|NP_504279.1| P GranuLe abnormality family member (pgl-3) ... 170 4e-40 gb|ACI49240.1| hypothetical protein Csp3_JD06.006 [Caenorhabd... 129 1e-27 Run PSI-Blast iteration 2 with max Sequences with E-value WORSE than threshold gb|ABA98766.1| retrotransposon protein, putative, unclassifie... 38.5 2.0 ref|YP_325363.1| hypothetical protein Ava_4871 [Anabaena vari... 38.5 2.2 ref|ZP_02210385.1| hypothetical protein CLOBAR_02793 [Clostri... 38.1 2.7 gb|AAQ56314.1| putative gag-pol precursor [Oryza sativa Japon... 37.7 3.3 ref|XP_001630233.1| predicted protein [Nematostella vectensis... 37.4 5.0 ref|XP_001646284.1| hypothetical protein Kpol_1032p19 [Vander... 37.0 5.3 ref|ZP_04985658.1| conserved hypothetical protein [Francisell... 37.0 5.9 ref|XP_001424960.1| hypothetical protein [Paramecium tetraure... 37.0 6.0 ref|YP_514110.1| hypothetical protein FTL_1459 [Francisella t... 37.0 6.4 ref|YP_002301368.1| tRNA(Ile)-lysidine synthetase [Helicobact... 36.6 7.7 ref|NP_487253.1| hypothetical protein alr3213 [Nostoc sp. PCC... 36.6 8.5 ref|YP_001642877.1| hypothetical protein BcerKBAB4_5851 [Baci... 36.2 9.0 ref|YP_002649222.1| Putative NAD-dependent aldehyde dehydroge... 36.2 9.9 Run PSI-Blast iteration 2 with max